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Data Aggregator

Indexed by io.github.musharna
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About

Find & fetch research datasets across 17 archives, omics registries, and literature sources.

Use this server

Add it to your MCP client. The catalogue lists this config verbatim from its source — it does not run, download, or vouch for the server. Review the command before you run it.

Transportstdio (runs a local command)
Env varsNCBI_API_KEY LLM_API_BASE LLM_API_KEY LLM_MODEL EMBEDDING_API_BASE EMBEDDING_API_KEY EMBEDDING_MODEL DATA_GOV_API_KEY UNPAYWALL_EMAIL NCBI_EMAIL DATAVERSE_BASE_URL CACHE_TTL_SECONDS
Claude Code 
claude mcp add --env NCBI_API_KEY= --env LLM_API_BASE= --env LLM_API_KEY= --env LLM_MODEL= --env EMBEDDING_API_BASE= --env EMBEDDING_API_KEY= --env EMBEDDING_MODEL= --env DATA_GOV_API_KEY= --env UNPAYWALL_EMAIL= --env NCBI_EMAIL= --env DATAVERSE_BASE_URL= --env CACHE_TTL_SECONDS= data-aggregator-mcp -- uvx data-aggregator-mcp
Cursor

Add to Cursor

If the button doesn't open Cursor, use the JSON below — Cursor accepts the same mcpServers config.

VS Code 
code --add-mcp '{"name":"data-aggregator-mcp","command":"uvx","args":["data-aggregator-mcp"],"env":{"NCBI_API_KEY":"","LLM_API_BASE":"","LLM_API_KEY":"","LLM_MODEL":"","EMBEDDING_API_BASE":"","EMBEDDING_API_KEY":"","EMBEDDING_MODEL":"","DATA_GOV_API_KEY":"","UNPAYWALL_EMAIL":"","NCBI_EMAIL":"","DATAVERSE_BASE_URL":"","CACHE_TTL_SECONDS":""}}'
JSON 
{
  "mcpServers": {
    "data-aggregator-mcp": {
      "command": "uvx",
      "args": [
        "data-aggregator-mcp"
      ],
      "env": {
        "NCBI_API_KEY": "",
        "LLM_API_BASE": "",
        "LLM_API_KEY": "",
        "LLM_MODEL": "",
        "EMBEDDING_API_BASE": "",
        "EMBEDDING_API_KEY": "",
        "EMBEDDING_MODEL": "",
        "DATA_GOV_API_KEY": "",
        "UNPAYWALL_EMAIL": "",
        "NCBI_EMAIL": "",
        "DATAVERSE_BASE_URL": "",
        "CACHE_TTL_SECONDS": ""
      }
    }
  }
}

Environment variables are listed by name only — fill in your own values. Entries never carry secrets.