galaxy-mcp

Indexed by io.github.galaxyproject

About

MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

Use this server

Add it to your MCP client. The catalogue lists this config verbatim from its source — it does not run, download, or vouch for the server. Review the command before you run it.

Transportstdio (runs a local command)

Env varsGALAXY_URL GALAXY_API_KEY

Claude Code

claude mcp add --env GALAXY_URL= --env GALAXY_API_KEY= galaxy-mcp -- uvx galaxy-mcp

Cursor

Add to Cursor

If the button doesn't open Cursor, use the JSON below — Cursor accepts the same mcpServers config.

VS Code

code --add-mcp '{"name":"galaxy-mcp","command":"uvx","args":["galaxy-mcp"],"env":{"GALAXY_URL":"","GALAXY_API_KEY":""}}'

JSON

{
  "mcpServers": {
    "galaxy-mcp": {
      "command": "uvx",
      "args": [
        "galaxy-mcp"
      ],
      "env": {
        "GALAXY_URL": "",
        "GALAXY_API_KEY": ""
      }
    }
  }
}

Environment variables are listed by name only — fill in your own values. Entries never carry secrets.