protein-mcp-server

Indexed by io.github.cyanheads

About

MCP Server for 3D protein structural data retrieval & analysis from RCSB PDB, PDBe, and UniProt.

Use this server

Add it to your MCP client. The catalogue lists this config verbatim from its source — it does not run, download, or vouch for the server. Review the command before you run it.

Transportstdio (runs a local command)

Env varsMCP_LOG_LEVEL

Claude Code

claude mcp add --env MCP_LOG_LEVEL= protein-mcp-server -- npx protein-mcp-server

Cursor

Add to Cursor

If the button doesn't open Cursor, use the JSON below — Cursor accepts the same mcpServers config.

VS Code

code --add-mcp '{"name":"protein-mcp-server","command":"npx","args":["protein-mcp-server"],"env":{"MCP_LOG_LEVEL":""}}'

JSON

{
  "mcpServers": {
    "protein-mcp-server": {
      "command": "npx",
      "args": [
        "protein-mcp-server"
      ],
      "env": {
        "MCP_LOG_LEVEL": ""
      }
    }
  }
}

Environment variables are listed by name only — fill in your own values. Entries never carry secrets.