ENCODE Toolkit

Indexed by io.github.ammawla

About

20 MCP tools + 48 skills for ENCODE Project genomics — search, download, pipelines

Use this server

Add it to your MCP client. The catalogue lists this config verbatim from its source — it does not run, download, or vouch for the server. Review the command before you run it.

Transportstdio (runs a local command)

Claude Code

claude mcp add encode-toolkit -- npx encode-toolkit

Cursor

Add to Cursor

If the button doesn't open Cursor, use the JSON below — Cursor accepts the same mcpServers config.

VS Code

code --add-mcp '{"name":"encode-toolkit","command":"npx","args":["encode-toolkit"]}'

JSON

{
  "mcpServers": {
    "encode-toolkit": {
      "command": "npx",
      "args": [
        "encode-toolkit"
      ]
    }
  }
}